SpyKING CIRCUS 2: tuning
| Setting | Raise it | Lower it |
|---|---|---|
detect_threshold (5) |
fewer, larger peaks to cluster | more small units, more noise peaks |
min_cluster_size (20) |
fewer, larger clusters | more small clusters (also slower) |
merge_similarity (0.8) |
fewer merges: units split across templates stay split | more merges: similar units joined |
min_snr (5) |
only large templates are matched | small units kept (more false ones) |
omp_min_amplitude (0.6) |
only spikes close to their template’s size | more small matches (and noise) |
n_peaks_per_channel (5000) |
more peaks clustered: rare units found, slower | faster, rare units missed |
Check a change with the unit labels and composite score of the sorting (to_sorting_output), and
against another sorter on the same recording (Benchmarks).