MountainSort 5: tuning
MountainSort 5 has few settings by design: isosplit6 has no cluster count or tuning parameter. What to change:
| Setting | Raise it | Lower it |
|---|---|---|
detect_threshold (5.5) |
fewer, larger spikes; small units missed | more small spikes and noise events |
snippet_mask_radius_um (250 µm) |
more channels per snippet: more context, more memory | fewer channels: faster, less separation of nearby units |
training_duration_sec (300 s) |
more spikes to cluster: better rare units, slower phase 1 | faster; rare units may be missed |
detect_channel_radius_um (50 µm) |
fewer duplicate detections of one spike | more events per spike on dense probes |
npca_per_subdivision (10) |
more dimensions for isosplit6 (slower, may separate similar units) | coarser clusters |